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Varela, M. et al. (2013) Genetic imprint of vaccination on simian/human immunodeficiency virus type 1 transmitted viral genomes in Rhesus Macaques. PLoS ONE, 8(8), e70814. (doi: 10.1371/journal.pone.0070814) (PMID:23967111) (PMCID:PMC3743870)
McKinley, T.J., Murcia, P.R. , Gog, J.R., Varela, M. and Wood, J.L.N. (2011) A Bayesian approach to analyse genetic variation within RNA viral populations. PLoS Computational Biology, 7(3), e1002027. (doi: 10.1371/journal.pcbi.1002027)