Haig, S.-J., Gauchotte-Lindsay, C. , Collins, G. and Quince, C. (2016) Bioaugmentation mitigates the impact of estrogen on coliform-grazing protozoa in slow sand filters. Environmental Science and Technology, 50(6), pp. 3101-3110. (doi: 10.1021/acs.est.5b05027) (PMID:26895622) (PMCID:PMC4841604)

Schirmer, M., D’Amore, R., Ijaz, U. Z. , Hall, N. and Quince, C. (2016) Illumina error profiles: resolving fine-scale variation in metagenomic sequencing data. BMC Bioinformatics, 17, 125. (doi: 10.1186/s12859-016-0976-y) (PMID:26968756) (PMCID:PMC4787001)

Haig, S.-J., Schirmer, M., D'Amore, R., Gibbs, J., Davies, R. L. , Collins, G. and Quince, C. (2015) Stable-isotope probing and metagenomics reveal predation by protozoa drives E. coli removal in slow sand filters. ISME Journal, 9(4), pp. 797-808. (doi: 10.1038/ismej.2014.175) (PMID:25279786)

Schirmer, M., Ijaz, U. Z. , D'Amore, R., Hall, N., Sloan, W. T. and Quince, C. (2015) Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform. Nucleic Acids Research, 43(6), e37. (doi: 10.1093/nar/gku1341) (PMID:25586220) (PMCID:PMC4381044)

Fonseca, V. G., Carvalho, G. R., Nichols, B., Quince, C., Johnson, H. F., Neill, S. P., Lambshead, J. D., Thomas, W. K., Power, D. M. and Creer, S. (2014) Metagenetic analysis of patterns of distribution and diversity of marine meiobenthic eukaryotes. Global Ecology and Biogeography, 23(11), pp. 1293-1302. (doi: 10.1111/geb.12223)

Haig, S.-J., Quince, C., Davies, R. L. , Dorea, C. C. and Collins, G. (2014) Replicating the microbial community and water quality performance of full-scale slow sand filters in laboratory-scale filters. Water Research, 61, pp. 141-151. (doi: 10.1016/j.watres.2014.05.008) (PMID:24908577)

Schirmer, M., Sloan, W. T. and Quince, C. (2014) Benchmarking of viral haplotype reconstruction programmes: an overview of the capacities and limitations of currently available programmes. Briefings in Bioinformatics, 15(3), pp. 431-442. (doi: 10.1093/bib/bbs081)

Alneberg, J., Bjarnason, B. S., de Bruijn, I., Schirmer, M., Quick, J., Ijaz, U. Z. , Lahti, L., Loman, N. J., Andersson, A. F. and Quince, C. (2014) Binning metagenomic contigs by coverage and composition. Nature Methods, 11(11), pp. 1144-1146. (doi: 10.1038/NMETH.3103) (PMID:25218180)

Mahé, F., Rognes, T., Quince, C., de Vargas, C. and Dunthorn, M. (2014) Swarm: robust and fast clustering method for amplicon-based studies. PeerJ, 2(e593), (doi: 10.7717/peerj.593) (PMID:25276506)

Shakya, M., Quince, C., Campbell, J. H., Yang, Z. K., Schadt, C. W. and Podar, M. (2013) Comparative metagenomic and rRNA microbial diversity characterization using archaeal and bacterial synthetic communities. Environmental Microbiology, 15(6), pp. 1882-1899. (doi: 10.1111/1462-2920.12086) (PMID:23387867)

Fonseca, V.G., Nichols, B., Lallias, D., Quince, C., Carvalho, G.R., Power, D.M. and Creer, S. (2012) Sample richness and genetic diversity as drivers of chimera formation in nSSU metagenetic analyses. Nucleic Acids Research, 40(9), e66. (doi: 10.1093/nar/gks002)

Gobet, A., Böer, S. I., Huse, S. M., van Beusekom, J. E. E., Quince, C., Sogin, M. L., Boetius, A. and Ramette, A. (2012) Diversity and dynamics of rare and of resident bacterial populations in coastal sands. ISME Journal, 6(3), pp. 542-553. (doi: 10.1038/ismej.2011.132)

Holmes, I., Harris, K. and Quince, C. (2012) Dirichlet multinomial mixtures: generative models for microbial metagenomics. PLoS ONE, 7(2), e30126. (doi: 10.1371/journal.pone.0030126) (PMID:22319561) (PMCID:PMC3272020)

Gubry-Rangin, C., Hai, B., Quince, C., Engel, M., Thomson, B. C., James, P., Schloter, M., Griffiths, R. I., Prosser, J. I. and Nicoll, G. W. (2011) Niche specialization of terrestrial archaeal ammonia oxidizers. Proceedings of the National Academy of Sciences of the United States of America, 108(52), pp. 21206-21211. (doi: 10.1073/pnas.1109000108)

Edgar, R. C., Haas, B. J., Clemente, J. C., Quince, C. and Knight, R. (2011) UCHIME improves sensitivity and speed of chimera detection. Bioinformatics, 27(16), pp. 2194-2200. (doi: 10.1093/bioinformatics/btr381)

Quince, C., Lanzen, A., Davenport, R. J. and Turnbaugh, P. J. (2011) Removing noise from pyrosequenced amplicons. BMC Bioinformatics, 12(38), (doi: 10.1186/1471-2105-12-38)

Parsons, T. L., Quince, C. and Plotkin, J. B. (2010) Some Consequences of Demographic Stochasticity in Population Genetics. Genetics, 185(4), pp. 1345-1354. (doi: 10.1534/genetics.110.115030)