BioNessie - a grid enabled biochemical networks simulation environment

Liu, X., Jiang, J., Ajayi, O., Gu, X., Gilbert, D. and Sinnott, R.O. (2008) BioNessie - a grid enabled biochemical networks simulation environment. Studies in Health Technology and Informatics, 138, pp. 147-157.

Abstract

The simulation of biochemical networks provides insight and understanding about the underlying biochemical processes and pathways used by cells and organisms. BioNessie is a biochemical network simulator which has been developed at the University of Glasgow. This paper describes the simulator and focuses in particular on how it has been extended to benefit from a wide variety of high performance compute resources across the UK through Grid technologies to support larger scale simulations.

• Item Type: Articles
• Status: Published
• Refereed: Yes
• Glasgow Author(s) Enlighten ID: Jiang, Mr Jipu and Gilbert, Prof David and Sinnott, Professor Richard and Liu, Mr Xuan
• Authors: Liu, X., Jiang, J., Ajayi, O., Gu, X., Gilbert, D., and Sinnott, R.O.
• Subjects: Q Science > QA Mathematics > QA75 Electronic computers. Computer science
• College/School: College of Science and Engineering > School of Computing Science; University Services > IT Services > Computing Service
• Journal Name: Studies in Health Technology and Informatics
• Publisher: IOS Press
• ISSN: 0926-9630
• Copyright Holders: Copyright © 2008 IOS Press
• First Published: First published in Studies in Health Technology and Informatics 138:147-157
• Publisher Policy: Reproduced in accordance with the copyright policy of the publisher.