Resurrection of 2′-5′-oligoadenylate synthetase 1 (OAS1) from the ancestor of modern horseshoe bats blocks SARS-CoV-2 replication

Lytras, S. et al. (2023) Resurrection of 2′-5′-oligoadenylate synthetase 1 (OAS1) from the ancestor of modern horseshoe bats blocks SARS-CoV-2 replication. PLoS Biology, 21(11), e3002398. (doi: 10.1371/journal.pbio.3002398) (PMID:38015855)

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Abstract

The prenylated form of the human 2′-5′-oligoadenylate synthetase 1 (OAS1) protein has been shown to potently inhibit the replication of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2), the virus responsible for the Coronavirus Disease 2019 (COVID-19) pandemic. However, the OAS1 orthologue in the horseshoe bats (superfamily Rhinolophoidea), the reservoir host of SARS-related coronaviruses (SARSr-CoVs), has lost the prenylation signal required for this antiviral activity. Herein, we used an ancestral state reconstruction approach to predict and reconstitute in vitro, the most likely OAS1 protein sequence expressed by the Rhinolophoidea common ancestor prior to its prenylation loss (RhinoCA OAS1). We exogenously expressed the ancient bat protein in vitro to show that, unlike its non-prenylated horseshoe bat descendants, RhinoCA OAS1 successfully blocks SARS-CoV-2 replication. Using protein structure predictions in combination with evolutionary hypothesis testing methods, we highlight sites under unique diversifying selection specific to OAS1’s evolution in the Rhinolophoidea. These sites are located near the RNA-binding region and the C-terminal end of the protein where the prenylation signal would have been. Our results confirm that OAS1 prenylation loss at the base of the Rhinolophoidea clade ablated the ability of OAS1 to restrict SARSr-CoV replication and that subsequent evolution of the gene in these bats likely favoured an alternative function. These findings can advance our understanding of the tightly linked association between SARSr-CoVs and horseshoe bats.

Item Type:Articles
Additional Information:This study was supported by Medical Research Council (https://www.ukri.org/councils/mrc) awards MR/P022642/1 (SJW), MR/V01157X/1 (SJW) and MC_UU_12014/12 (JH). SS holds a Daphne Jackson Fellowship funded by Medical Research Scotland.
Status:Published
Refereed:Yes
Glasgow Author(s) Enlighten ID:Davies, Miss Emma and Stewart, Mr Douglas and Swingler, Dr Simon and Wilson, Professor Sam and Wickenhagen, Mr Arthur and Sugrue, Dr Elena and Hughes, Dr Joseph and Lytras, Mr Spyros and Jackson Ireland, Hollie and Sims, Miss Anna
Creator Roles:
Lytras, S.Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Software, Validation, Visualization, Writing – original draft, Writing – review and editing
Wickenhagen, A.Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Validation, Visualization, Writing – original draft, Writing – review and editing
Sugrue, E.Conceptualization, Formal analysis, Investigation, Methodology, Validation, Writing – original draft, Writing – review and editing
Stewart, D.Formal analysis, Investigation, Methodology, Validation, Visualization, Writing – review and editing
Swingler, S.Data curation, Formal analysis, Investigation, Methodology, Validation, Writing – review and editing
Sims, A.Data curation, Formal analysis, Investigation, Methodology, Validation, Writing – review and editing
Jackson Ireland, H.Investigation, Validation, Writing – review and editing
Davies, E.Investigation, Validation, Writing – review and editing
Hughes, J.Conceptualization, Supervision, Writing – review and editing
Wilson, S.Conceptualization, Funding acquisition, Supervision, Writing – review and editing
Authors: Lytras, S., Wickenhagen, A., Sugrue, E., Stewart, D. G., Swingler, S., Sims, A., Jackson Ireland, H., Davies, E. L., Ludlam, E. M., Li, Z., Hughes, J., and Wilson, S. J.
College/School:College of Medical Veterinary and Life Sciences
College of Medical Veterinary and Life Sciences > School of Infection & Immunity
College of Medical Veterinary and Life Sciences > School of Infection & Immunity > Centre for Virus Research
Journal Name:PLoS Biology
Publisher:Public Library of Science
ISSN:1544-9173
ISSN (Online):1545-7885
Copyright Holders:Copyright © 2023 The Authors
First Published:First published in PLoS Biology 21(11):e3002398
Publisher Policy:Reproduced under a Creative Commons License

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Project CodeAward NoProject NamePrincipal InvestigatorFunder's NameFunder RefLead Dept
301840Host and Viral Determinants of Interferon Resistance During HIV-1 TransmissionSam WilsonMedical Research Council (MRC)MR/P022642/1SII - Virology
311288Identifying the Host and Viral Determinants of Coronavirus Emergence and Adaptation in Human PopulationsSam WilsonMedical Research Council (MRC)MR/V01157X/1Computing Science
172630014Cross-Cutting Programme – Viral Genomics and Bioinformatics (Programme 9)David RobertsonMedical Research Council (MRC)MC_UU_12014/12III - Centre for Virus Research