Using approximate Bayesian inference for a "steps and turns" continuous-time random walk observed at regular time intervals

Ruiz-Suarez, S., Leos-Barajas, V., Alvarez-Castro, I. and Morales, J. M. (2020) Using approximate Bayesian inference for a "steps and turns" continuous-time random walk observed at regular time intervals. PeerJ, 8(2), e8452. (doi: 10.7717/peerj.8452) (PMID:32095333) (PMCID:PMC7020826)

Abstract

The study of animal movement is challenging because movement is a process modulated by many factors acting at different spatial and temporal scales. In order to describe and analyse animal movement, several models have been proposed which differ primarily in the temporal conceptualization, namely continuous and discrete time formulations. Naturally, animal movement occurs in continuous time but we tend to observe it at fixed time intervals. To account for the temporal mismatch between observations and movement decisions, we used a state-space model where movement decisions (steps and turns) are made in continuous time. That is, at any time there is a non-zero probability of making a change in movement direction. The movement process is then observed at regular time intervals. As the likelihood function of this state-space model turned out to be intractable yet simulating data is straightforward, we conduct inference using different variations of Approximate Bayesian Computation (ABC). We explore the applicability of this approach as a function of the discrepancy between the temporal scale of the observations and that of the movement process in a simulation study. Simulation results suggest that the model parameters can be recovered if the observation time scale is moderately close to the average time between changes in movement direction. Good estimates were obtained when the scale of observation was up to five times that of the scale of changes in direction. We demonstrate the application of this model to a trajectory of a sheep that was reconstructed in high resolution using information from magnetometer and GPS devices. The state-space model used here allowed us to connect the scales of the observations and movement decisions in an intuitive and easy to interpret way. Our findings underscore the idea that the time scale at which animal movement decisions are made needs to be considered when designing data collection protocols. In principle, ABC methods allow to make inferences about movement processes defined in continuous time but in terms of easily interpreted steps and turns.

• Item Type: Articles
• Status: Published
• Refereed: Yes
• Glasgow Author(s) Enlighten ID: Morales, Professor Juan
• Authors: Ruiz-Suarez, S., Leos-Barajas, V., Alvarez-Castro, I., and Morales, J. M.
• College/School: College of Medical Veterinary and Life Sciences > School of Biodiversity, One Health & Veterinary Medicine
• Journal Name: PeerJ
• Publisher: PeerJ
• ISSN: 2167-8359
• ISSN (Online): 2167-8359
• Published Online: 11 February 2020
• Copyright Holders: Copyright © 2020 Ruiz-Suarez et al.
• First Published: First published in PeerJ 8(2):e8452
• Publisher Policy: Reproduced under a Creative Commons license