Gossel, G., Hogan, T., Cownden, D., Seddon, B. and Yates, A. J. (2017) Memory CD4 T cell subsets are kinetically heterogeneous and replenished from naive T cells at high levels. eLife, 6, e23013. (doi: 10.7554/eLife.23013) (PMID:28282024) (PMCID:PMC5426903)

Lee, E. S. , Thomas, P. G., Mold, J. E. and Yates, A. J. (2017) Identifying T cell receptors from high-throughput sequencing: dealing with promiscuity in TCRα and TCRβ pairing. PLoS Computational Biology, 13(1), e1005313. (doi: 10.1371/journal.pcbi.1005313) (PMID:28103239) (PMCID:PMC5289640)

Hogan, T., Gossel, G., Yates, A. and Seddon, B. (2015) Temporal fate mapping reveals age-linked heterogeneity in naive T lymphocytes in mice. Proceedings of the National Academy of Sciences of the United States of America, 112(50), E6917-E6926. (doi: 10.1073/pnas.1517246112) (PMID:26607449) (PMCID:PMC4687551)

Kadolsky, U. D. and Yates, A. J. (2015) How is the effectiveness of immune surveillance impacted by the spatial distribution of spreading infections? Philosophical Transactions of the Royal Society B: Biological Sciences, 370(1675), 20140289. (doi: 10.1098/rstb.2014.0289) (PMID:26150655)

Hogan, T., Kadolsky, U., Tung, S., Seddon, B. and Yates, A. (2014) Spatial heterogeneity and peptide availability determine CTL killing efficiency in vivo. PLoS Computational Biology, 10(9), e1003805. (doi: 10.1371/journal.pcbi.1003805)

Yates, A. J. (2014) Theories and quantification of thymic selection. Frontiers in Immunology, 5, p. 13. (doi: 10.3389/fimmu.2014.13)

Bains, I., van Santen, H. M., Seddon, B. and Yates, A. J. (2013) Models of self-peptide sampling by developing T cells identify candidate mechanisms of thymic selection. PLoS Computational Biology, 9(7), e1003102. (doi: 10.1371/journal.pcbi.1003102)

Cameron, A., Reece, S. E., Drew, D. R., Haydon, D. T. and Yates, A. J. (2013) Plasticity in transmission strategies of the malaria parasite, plasmodium chabaudi: environmental and genetic effects. Evolutionary Applications, 6(2), pp. 365-376. (doi: 10.1111/eva.12005)

Sinclair, C., Bains, I., Yates, A. J. and Seddon, B. (2013) Asymmetric thymocyte death underlies the CD4:CD8 T-cell ratio in the adaptive immune system. Proceedings of the National Academy of Sciences of the United States of America, 110(31), E2905-E2914. (doi: 10.1073/pnas.1304859110)

Yates, A. J. , Bains, I. and Callard, R. E. (2013) Heterogeneity in thymic emigrants: implications for thymectomy and immunosenescence. PLoS ONE, 8(2), e49554. (doi: 10.1371/journal.pone.0049554) (PMID:23468830) (PMCID:PMC3584139)

Johnson, P. L. F., Yates, A. J. , Goronzy, J. J. and Antia, R. (2012) Peripheral selection rather than thymic involution explains sudden contraction in naive CD4 T-cell diversity with age. Proceedings of the National Academy of Sciences of the United States of America, 109(52), pp. 21432-21437. (doi: 10.1073/pnas.1209283110)

Mandl, J. N., Liou, R., Klauschen, F., Vrisekoop, N., Monteiro, J. P., Yates, A. J. , Huang, A. Y. and Germain, R. N. (2012) Quantification of lymph node transit times reveals differences in antigen surveillance strategies of naive CD4+ and CD8+ T cells. Proceedings of the National Academy of Sciences of the United States of America, 109(44), pp. 18036-18041. (doi: 10.1073/pnas.1211717109)

Lee, M., Mandl, J. N., Germain, R. N. and Yates, A. J. (2012) The race for the prize: T-cell trafficking strategies for optimal surveillance. Blood, 120(7), pp. 1432-1438. (doi: 10.1182/blood-2012-04-424655)

Van Baalen, M., Yates, A. J. and Antia, R. (2011) Virus replication strategies and the critical CTL numbers required for the control of infection. PLoS Computational Biology, 7(11), e1002274. (doi: 10.1371/journal.pcbi.1002274)