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Logan, M. et al. (2019) The reduction of faecal calprotectin during exclusive enteral nutrition is lost rapidly after food re-introduction. Alimentary Pharmacology and Therapeutics, (Accepted for Publication)

Plancq, J. , Couto, J., Ijaz, U. Z. , Leavitt, P. R. and Toney, J. (2019) Next generation sequencing to identify lacustrine haptophytes in the Canadian Prairies: significance for temperature proxy applications. Journal of Geophysical Research: Biogeosciences, (Accepted for Publication)

Ormsby, M. J. et al. (2019) Inflammation associated ethanolamine facilitates infection by Crohn's disease-linked adherent-invasive Escherichia coli. EBioMedicine, 43, pp. 325-332. (doi:10.1016/j.ebiom.2019.03.071) (PMID:31036531) (PMCID:PMC6557746)

Svolos, V. et al. (2019) Treatment of active Crohn’s disease with an ordinary food-based diet that replicates exclusive enteral nutrition. Gastroenterology, 156(5), 1354-1367.e6. (doi:10.1053/j.gastro.2018.12.002)

Gauchotte-Lindsay, C., Aspray, T. J., Knapp, M. and Ijaz, U. Z. (2019) Systems biology approach to elucidation of contaminants biodegradation in complex samples- integration of high-resolution analytical and molecular tools. Faraday Discussions, (doi:10.1039/C9FD00020H) (Early Online Publication)

Dingle, K. E. et al. (2019) A role for tetracycline selection in recent evolution of agriculture-associated Clostridium difficile PCR ribotype 078. mBio, 10(2), e02790-18. (doi:10.1128/mBio.02790-18) (PMID:30862754) (PMCID:PMC6414706)

Cholet, F., Ijaz, U. Z. and Smith, C. J. (2019) Differential ratio amplicons (Ramp) for the evaluation of RNA integrity extracted from complex environmental samples. Environmental Microbiology, 21(2), pp. 827-844. (doi:10.1111/1462-2920.14516) (PMID:30585386) (PMCID:PMC6392129)

Calus, S. T., Ijaz, U. Z. and Pinto, A. (2018) NanoAmpli-Seq: a workflow for amplicon sequencing for mixed microbial communities on the nanopore sequencing platform. GigaScience, 7(12), giy140. (doi:10.1093/gigascience/giy140) (PMID:30476081) (PMCID:PMC6298384)

Kostrytsia, A., Papirio, S., Morrison, L., Ijaz, U. Z. , Collins, G., Lens, P. N.L. and Esposito, G. (2018) Biokinetics Of microbial consortia using biogenic sulfur as a novel electron donor for sustainable denitrification. Bioresource Technology, 270, pp. 359-367. (doi:10.1016/j.biortech.2018.09.044) (PMID:30243243)

De Vrieze, J., Ijaz, U. Z. , Saunders, A. M. and Theuerl, S. (2018) Terminal restriction fragment length polymorphism is an “old school” reliable technique for swift microbial community screening in anaerobic digestion. Scientific Reports, 8, 16818. (doi:10.1038/s41598-018-34921-7) (PMID:30429514) (PMCID:PMC6235954)

Ijaz, U. Z. et al. (2018) Comprehensive longitudinal microbiome analysis of the chicken cecum reveals a shift from competitive to environmental drivers and a window of opportunity for Campylobacter. Frontiers in Microbiology, 9, 2452. (doi:10.3389/fmicb.2018.02452) (PMID:30374341) (PMCID:PMC6196313)

Gerasimidis, K. , Zafeiropoulou, K., Mackinder-Jonas, M., Ijaz, U. Z. , Duncan, H., Buchanan, E., Cardigan, T., Edwards, C. A. , McGrogan, P. and Russell, R. K. (2018) Comparison of clinical methods with the faecal gluten immunogenic peptide to assess gluten intake in coeliac disease. Journal of Pediatric Gastroenterology and Nutrition, 67(3), pp. 356-360. (doi:10.1097/MPG.0000000000002062) (PMID:29916953)

Reich, I., Ijaz, U. Z. , Gormally, M. and Smith, C. J. (2018) 16S rRNA sequencing reveals likely beneficial core microbes within faecal samples of the EU protected slug Geomalacus maculosus. Scientific Reports, 8, 10402. (doi:10.1038/s41598-018-28720-3) (PMID:29991804) (PMCID:PMC6039444)

Keating, C. , Hughes, D., Mahony, T., Cysneiros, D., Ijaz, U.Z. , Smith, C.J. and O‘Flaherty, V. (2018) Cold adaptation and replicable microbial community development during long-term low temperature anaerobic digestion treatment of synthetic sewage. FEMS Microbiology Ecology, 94(7), fiy095. (doi:10.1093/femsec/fiy095) (PMID:29846574) (PMCID:PMC5995215)

Yuan, X. et al. (2018) Effect of laser irradiation on cell function and its implications in Raman spectroscopy. Applied and Environmental Microbiology, 84(8), e02508-17. (doi:10.1128/AEM.02508-17)

Pinto, A. J., de Vrieze, J., Sloan, W. T. and Ijaz, U. Z. (2018) The active microbial community more accurately reflects the anaerobic digestion process: 16S rRNA (gene) sequencing as a predictive tool. Microbiome, 6, 63. (doi:10.1186/s40168-018-0449-9) (PMID:29609653) (PMCID:PMC5879801)

Pedersen, C. et al. (2018) Fecal Enterobacteriales enrichment is associated with increased in vivo intestinal permeability in humans. Physiological Reports, 6(7), e13649. (doi:10.14814/phy2.13649) (PMID:29611319) (PMCID:PMC5880877)

Joyce, A., Ijaz, U. Z. , Nzeteu, C., Vaughan, A., Shirran, S. L., Botting, C. H., Quince, C., O'Flaherty, V. and Abram, F. (2018) Linking microbial community structure and function during the acidified anaerobic digestion of grass. Frontiers in Microbiology, 9, 540. (doi:10.3389/fmicb.2018.00540) (PMID:29619022) (PMCID:PMC5871674)

Koci, O., Logan, M., Svolos, V., Russell, R. K., Gerasimidis, K. and Ijaz, U. Z. (2018) An automated identification and analysis of ontological terms in gastrointestinal diseases and nutrition-related literature provides useful insights. PeerJ, 6, e5047. (doi:10.7717/peerj.5047) (PMID:30065857) (PMCID:PMC6064635)

Ho, A., Ijaz, U. Z. , Janssens, T. K.S., Ruijs, R., Kim, S. Y., de Boer, W., Termorshuizen, A., van der Putten, W. H. and Bodelier, P. L.E. (2017) Effects of bio-based residue amendments on greenhouse gas emission from agricultural soil are stronger than effects of soil type with different microbial community composition. GCB Bioenergy, 9(12), pp. 1707-1720. (doi:10.1111/gcbb.12457)

Parsons, B. N. et al. (2017) Comparison of the human gastric microbiota in hypochlorhydric states arising as a result of Helicobacter pylori-induced atrophic gastritis, autoimmune atrophic gastritis and proton pump inhibitor use. PLoS Pathogens, 13(11), e1006653. (doi:10.1371/journal.ppat.1006653) (PMID:29095917) (PMCID:PMC5667734)

Ijaz, A. Z., Jeffries, T. C., Ijaz, U. Z. , Hamonts, K. and SinghIjaz, B. K. (2017) Extending Seqenv: a taxa-centric approach to environmental annotations of 16S rDNA sequences. PeerJ, 5, e3827. (doi:10.7717/peerj.3827) (PMID:29038749) (PMCID:PMC5639872)

Cho, S.-K., Jung, K.-W., Kim, D.-H., Kwon, J.-C., Ijaz, U. Z. and Shin, S. G. (2017) Bacterial community analysis in upflow multilayer anaerobic reactor (UMAR) treating high-solids organic wastes. Biotechnology Progress, 33(5), pp. 1226-1234. (doi:10.1002/btpr.2540) (PMID:28840641)

Connelly, S. , Shin, S. G., Dillon, R. J., Ijaz, U. Z. , Quince, C., Sloan, W. T. and Collins, G. (2017) Bioreactor scalability: laboratory-scale bioreactor design influences performance, ecology, and community physiology in expanded granular sludge bed bioreactors. Frontiers in Microbiology, 8, 664. (doi:10.3389/fmicb.2017.00664)

De Vrieze, J., Christiaens, M. E.R., Walraedt, D., Devooght, A., Ijaz, U. Z. and Boon, N. (2017) Microbial community redundancy in anaerobic digestion drives process recovery after salinity exposure. Water Research, 111, pp. 109-117. (doi:10.1016/j.watres.2016.12.042) (PMID:28063283)

Ijaz, U. Z. et al. (2017) The distinct features of microbial 'dysbiosis' of Crohn's disease do not occur to the same extent in their unaffected, genetically linked kindred. PLoS ONE, 12(2), e0172605. (doi:10.1371/journal.pone.0172605) (PMID:28222161) (PMCID:PMC5319678)

Sinclair, L. et al. (2016) Seqenv: linking sequences to environments through text mining. PeerJ, 4, e2690. (doi:10.7717/peerj.2690)

Schirmer, M., D’Amore, R., Ijaz, U. Z. , Hall, N. and Quince, C. (2016) Illumina error profiles: resolving fine-scale variation in metagenomic sequencing data. BMC Bioinformatics, 17, 125. (doi:10.1186/s12859-016-0976-y) (PMID:26968756) (PMCID:PMC4787001)

Torondel, B. et al. (2016) Assessment of the influence of intrinsic environmental and geographical factors on the bacterial ecology of pit latrines. Microbial Biotechnology, 9(2), pp. 209-223. (doi:10.1111/1751-7915.12334) (PMID:26875588) (PMCID:PMC4767293)

D’Amore, R., Ijaz, U. Z. , Schirmer, M., Kenny, J. G., Gregory, R., Darby, A. C., Shakya, M., Podar, M., Quince, C. and Hall, N. (2016) A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling. BMC Genomics, 17, 55. (doi:10.1186/s12864-015-2194-9) (PMID:26763898) (PMCID:PMC4712552)

Gerasimidis, K. , Bertz, M., Quince, C., Brunner, K., Bruce, A., Combet, E. , Calus, S., Loman, N. and Ijaz, U. (2016) The effect of DNA extraction methodology on gut microbiota research applications. BMC Research Notes, 9, 365. (doi:10.1186/s13104-016-2171-7) (PMID:27456340) (PMCID:PMC4960752)

Bautista-de los Santos, Q. M., Schroeder, J., Sevillano-Rivera, M. C., Sungthong, R. , Ijaz, U. Z. , Sloan, W. T. and Pinto, A. J. (2016) Emerging investigators series: Microbial communities in full-scale drinking water distribution systems – A meta-analysis. Environmental Science: Water Research and Technology, 2(4), pp. 631-644. (doi:10.1039/C6EW00030D)

Couto, J. M., Ijaz, U. Z. , Phoenix, V. R. , Schirmer, M. and Sloan, W. T. (2015) Metagenomic sequencing unravels gene fragments with phylogenetic signatures of O2-tolerant NiFe membrane-bound hydrogenases in lacustrine sediment. Current Microbiology, 71(2), pp. 296-302. (doi:10.1007/s00284-015-0846-2) (PMID:26044993) (PMCID:PMC4486115)

This list was generated on Thu Sep 19 23:08:13 2019 BST.