Ozymandias: a biodiversity knowledge graph

Page, R. D.M. (2019) Ozymandias: a biodiversity knowledge graph. PeerJ, 7, e6739. (doi:10.7717/peerj.6739)

Page, R. D.M. (2019) Ozymandias: a biodiversity knowledge graph. PeerJ, 7, e6739. (doi:10.7717/peerj.6739)

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Abstract

Enormous quantities of biodiversity data are being made available online, but much of this data remains isolated in silos. One approach to breaking these silos is to map local, often database-specific identifiers to shared global identifiers. This mapping can then be used to construct a knowledge graph, where entities such as taxa, publications, people, places, specimens, sequences, and institutions are all part of a single, shared knowledge space. Motivated by the 2018 GBIF Ebbe Nielsen Challenge I explore the feasibility of constructing a “biodiversity knowledge graph” for the Australian fauna. The data cleaning and reconciliation steps involved in constructing the knowledge graph are described in detail. Examples are given of its application to understanding changes in patterns of taxonomic publication over time. A web interface to the knowledge graph (called “Ozymandias”) is available at https://ozymandias-demo.herokuapp.com.

Item Type:Articles
Status:Published
Refereed:Yes
Glasgow Author(s) Enlighten ID:Page, Professor Roderic
Authors: Page, R. D.M.
College/School:College of Medical Veterinary and Life Sciences > Institute of Biodiversity Animal Health and Comparative Medicine
Journal Name:PeerJ
Publisher:PeerJ
ISSN:2167-8359
ISSN (Online):2167-8359
Copyright Holders:Copyright © 2019 Page
First Published:First published in PeerJ 7: e6739
Publisher Policy:Reproduced under a Creative Commons License
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