Carver, T., Bohme, U., Otto, T. D. , Parkhill, J. and Berriman, M. (2010) BamView: viewing mapped read alignment data in the context of the reference sequence. Bioinformatics, 26(5), pp. 676-677. (doi: 10.1093/bioinformatics/btq010) (PMID:20071372) (PMCID:PMC2828118)
|
Text
148342.pdf - Published Version Available under License Creative Commons Attribution Non-commercial. 198kB |
Abstract
Summary: BamView is an interactive Java application for visualizing the large amounts of data stored for sequence reads which are aligned against a reference genome sequence. It supports the BAM (Binary Alignment/Map) format. It can be used in a number of contexts including SNP calling and structural annotation. BamView has also been integrated into Artemis so that the reads can be viewed in the context of the nucleotide sequence and genomic features.
| Item Type: | Articles |
|---|---|
| Status: | Published |
| Refereed: | Yes |
| Glasgow Author(s) Enlighten ID: | Otto, Professor Thomas |
| Authors: | Carver, T., Bohme, U., Otto, T. D., Parkhill, J., and Berriman, M. |
| College/School: | College of Medical Veterinary and Life Sciences > School of Infection & Immunity |
| Journal Name: | Bioinformatics |
| Publisher: | Oxford University Press |
| ISSN: | 1367-4803 |
| ISSN (Online): | 1460-2059 |
| Copyright Holders: | Copyright ©2010 The Authors |
| First Published: | First published in Bioinformatics 26(5):676-677 |
| Publisher Policy: | Reproduced under a Creative Commons License |
University Staff: Request a correction | Enlighten Editors: Update this record
Deposit and Record Details
Deposit and Record Details