Image based machine learning for identification of macrophage subsets

Rostam, H. M., Reynolds, P. M. , Alexander, M. R., Gadegaard, N. and Ghaemmaghami, A. M. (2017) Image based machine learning for identification of macrophage subsets. Scientific Reports, 7(1), 3521. (doi:10.1038/s41598-017-03780-z) (PMID:28615717) (PMCID:PMC5471192)

[img]
Preview
Text
143123.pdf - Published Version
Available under License Creative Commons Attribution.

2MB

Abstract

Macrophages play a crucial rule in orchestrating immune responses against pathogens and foreign materials. Macrophages have remarkable plasticity in response to environmental cues and are able to acquire a spectrum of activation status, best exemplified by pro-inflammatory (M1) and anti-inflammatory (M2) phenotypes at the two ends of the spectrum. Characterisation of M1 and M2 subsets is usually carried out by quantification of multiple cell surface markers, transcription factors and cytokine profiles. These approaches are time-consuming, require large numbers of cells and are resource intensive. In this study, we used machine learning algorithms to develop a simple and fast imaging-based approach that enables automated identification of different macrophage functional phenotypes using their cell size and morphology. Fluorescent microscopy was used to assess cell morphology of different cell types which were stained for nucleus and actin distribution using DAPI and phalloidin respectively. By only analysing their morphology we were able to identify M1 and M2 phenotypes effectively and could distinguish them from naïve macrophages and monocytes with an average accuracy of 90%. Thus we suggest high-content and automated image analysis can be used for fast phenotyping of functionally diverse cell populations with reasonable accuracy and without the need for using multiple markers.

Item Type:Articles
Status:Published
Refereed:Yes
Glasgow Author(s) Enlighten ID:Gadegaard, Professor Nikolaj and Reynolds, Dr Paul
Authors: Rostam, H. M., Reynolds, P. M., Alexander, M. R., Gadegaard, N., and Ghaemmaghami, A. M.
College/School:College of Science and Engineering > School of Engineering > Biomedical Engineering
Journal Name:Scientific Reports
Publisher:Nature Publishing Group
ISSN:2045-2322
ISSN (Online):2045-2322
Published Online:14 June 2017
Copyright Holders:Copyright © 2017 The Authors
First Published:First published in Scientific Reports 7(1):3521
Publisher Policy:Reproduced under a Creative Commons License

University Staff: Request a correction | Enlighten Editors: Update this record